3UR3

Structure of the Cmr2 subunit of the CRISPR RNA silencing complex

  • PDB DOI:  https://doi.org/10.2210/pdb3UR3/pdb
  • Classification:  UNKNOWN FUNCTION
  • Organism(s):  Pyrococcus furiosus DSM 3638
  • Expression System:  Escherichia coli BL21(DE3)
  • Mutation(s): No 

  • Deposited: 2011-11-21 Released: 2012-03-21 
  • Deposition Author(s):  Cocozaki, A.I., Ramia, N.F., Shao, Y., Hale, C.R., Terns, R.M., Terns, M.P., Li, H.

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.218 
  • R-Value Observed: 0.222 

wwPDB Validation   3D Report  Full Report


This is version 1.2 of the entry. See complete  history. 


Literature

Structure of the Cmr2 Subunit of the CRISPR-Cas RNA Silencing Complex.

Cocozaki, A.I.,  Ramia, N.F.,  Shao, Y.,  Hale, C.R.,  Terns, R.M.,  Terns, M.P.,  Li, H.

(2012) Structure 20: 545-553

  • DOI:  https://doi.org/10.1016/j.str.2012.01.018
  • Primary Citation of Related Structures:  
    3UNG, 3UR3

  • PubMed Abstract: 

    Cmr2 is the largest and an essential subunit of a CRISPR RNA-Cas protein complex (the Cmr complex) that cleaves foreign RNA to protect prokaryotes from invading genetic elements. Cmr2 is thought to be the catalytic subunit of the effector complex because of its N-terminal HD nuclease domain. Here, however, we report that the HD domain of Cmr2 is not required for cleavage by the complex in vitro. The 2.3Å crystal structure of Pyrococcus furiosus Cmr2 (lacking the HD domain) reveals two adenylyl cyclase-like and two α-helical domains. The adenylyl cyclase-like domains are arranged as in homodimeric adenylyl cyclases and bind ADP and divalent metals. However, mutagenesis studies show that the metal- and ADP-coordinating residues of Cmr2 are also not critical for cleavage by the complex. Our findings suggest that another component provides the catalytic function and that the essential role by Cmr2 does not require the identified ADP- or metal-binding or HD domains in vitro.


  • Organizational Affiliation

    Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA.


Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
D [auth C]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Interactions  
 Interactions & Density  
CA
Query on CA

Download Ideal Coordinates CCD File 
B [auth C],
C
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Interactions  
 Interactions & Density  

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